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Changelog

Source: NEWS.md

riches 0.3.0

  • Added a NEWS.md file to track changes to the package.

  • Replaced the example data set with a molecular formula assigned AnalysisData class object.

  • Added a functionalEnrichment() method for the RandomForest S4 class.

  • Removed the EnrichmentParameters S4 class and associated methods.

  • Added example organism FELLA data for Brachypodium distachyon (bdi).

  • Added the organismData() function as a convenience wrapper for loading and building KEGG graph data for FELLA enrichment analyses.

  • Added accessor methods for the FunctionalEnrichment S4 class.

  • Added example structural classifications.

  • Added the structuralEnrichment() method for the RandomForest S4 class.

  • Functional and structural enrichment analyses can now be performed on explanatory features split by feature trends for binary comparisons or regression using the split argument of functionEnrichment() and structuralEnrichment().