Plot sample total ion counts — plotTIC • metabolyseR

Plot total ion counts of sample data.

Usage

plotTIC(analysis, by = "injOrder", colour = "block", ...)

# S4 method for AnalysisData
plotTIC(analysis, by = "injOrder", colour = "block")

# S4 method for Analysis
plotTIC(
  analysis,
  by = "injOrder",
  colour = "block",
  type = c("pre-treated", "raw")
)

Arguments

analysis: S4 object of class AnalysisData or Analysis
by: information column to plot against
colour: information column to provide colour labels
...: arguments to pass to the appropriate method
type: raw or pre-treated sample data

Examples

library(metaboData)

d <- analysisData(abr1$neg,abr1$fact)

## Plot sample TIVs
plotTIC(d,by = 'injorder',colour = 'day')


plotTIC(d,by = 'day',colour = 'day')