Changelog

Source: NEWS.md

grover 1.1.3

• Ensure that all vectors returned from functions used to list available information, such as grover::listFiles, are sorted client-side.

grover 1.1.2

• Ensure that the run information tibble returned by grover::runInfo is ordered by .RAW file name.

grover 1.1.1

• Ensure that grover::convertDirectory returns the file paths of the converted .mzML files for all the of the raw files in the specified directory.

grover 1.1.0

• Added the exclude argument to grover::convertDirectory and grover::runInfo to exclude raw files matching the specified patterns.

• grover::runInfo now collates the sample information client-side and so the time_out argument has been removed.

• The grover::groverAPI log_dir and temp_dir argument directories are now created recursively if they do not already exist.

• Improved the naming of the grover::groverAPI log files to include the current system date.

grover 1.0.9

• The grover::groverAPI log_dir and temp_dir argument directories are now created if they do not already exist.

• The grover::groverAPI temp_dir argument default is now tempdir().

• grover::extant now returns TRUE if the specified API is accessible and FALSE if not.

• The argument overwrite has now been added to grover::convertFile and grover::convertDirectory to enable the overwriting of local mzML files with the same file name as the raw files to be converted.

• Removed the build_vignettes argument from the installation instructions in the package README as the package documetation is available online from https://jasenfinch.github.io/grover.

• Removed the Introduction vignette as the majority of this information was duplicated in the package README.

grover 1.0.8

• Added Bioconductor package rawrr](https://bioconductor.org/packages/release/bioc/html/rawrr.html) as abiocremote to ensure the package can be installed correctly using [pak](https://pak.r-lib.org/) and [renv`.

grover 1.0.7

• Added biocViews field to the DESCRIPTION to ensure the `rawrr Bioconductor dependency is installed automatically.

• Fixed grover::converFile error when more than two options are supplied to the args parameter.

grover 1.0.6

• grover::converFile creates the output directory if it doesn’t already exist.

• Converted files now correctly zipped by grover::converFile to ensure they are readable by the mzR package.

grover 1.0.5

• File conversion methods grover::converFile and grover::convertDirectory now return the file path of the converted file.

• Zipping of converted files for reduced storage requirements can now be specified using the zip argument and is now the default of the conversion methods such as grover::converFile.

• Added grover::version to query the version number of a grover API.

• grover::groverAPI now ensures that the specified temp_dir is created if not already extant.

grover 1.0.4

• grover::conversionArgsPeakPick fix to ensure conversion argument is correctly passed to msconverteR.

grover 1.0.3

• rawR dependency updated to rawrr with package name change.

• Fixed typo grover::runInfo console message.

• Request timeout limit can now be set for grover::runInfo.

• Fixed grover::runInfo when attempting to retrieve file meta-information for a corrupt .raw file.

grover 1.0.2

• temp_dir argument added to grover::groverAPI to enable specification of a temporary directory for converted data storage.

• Fixed typo in grover::convertDirectory console message.

grover 1.0.1

• Added a NEWS.md file to track changes to the package.

• Fixed conversion argument helpers to work correctly with msconverteR.

• Converted files now returned correctly by the API.