Workflow definition target information

Return a tibble of information about the targets in a workflow definition.

Usage

manifest(x)

# S4 method for Workflow
manifest(x)

Arguments

x

S4 object of class Workflow

Examples

file_paths <- metaboData::filePaths('FIE-HRMS','BdistachyonEcotypes')
sample_information <- metaboData::runinfo('FIE-HRMS','BdistachyonEcotypes')

workflow_input <- inputFilePath(file_paths,sample_information)

workflow_definition <- defineWorkflow(workflow_input,
                                      'FIE-HRMS fingerprinting',
                                      'Example project')
                 
manifest(workflow_definition)
#> # A tibble: 42 × 3
#>    name                                    command                       pattern
#>    <chr>                                   <chr>                         <chr>  
#>  1 parameters_molecular_formula_assignment "assignments::assignmentPara… NA     
#>  2 parameters_correlations                 "metabolyseR::analysisParame… NA     
#>  3 file_paths_list                         "\"data/file_paths.txt\""     NA     
#>  4 sample_information_file                 "\"data/runinfo.csv\""        NA     
#>  5 mzML_files                              "readLines(file_paths_list)"  NA     
#>  6 sample_information                      "readr::read_csv(sample_info… NA     
#>  7 mzML                                    "mzML_files"                  map(mz…
#>  8 parameters_spectral_processing          "binneR::detectParameters(mz… NA     
#>  9 results_spectral_processing             "binneR::binneRlyse(mzML, sa… NA     
#> 10 parameters_pre_treatment                "metaboMisc::detectPretreatm… NA     
#> # ℹ 32 more rows