Get and set methods for the FilePathInput S4 class.
Usage
filePaths(x)
# S4 method for FilePathInput
filePaths(x)
filePaths(x) <- value
# S4 method for FilePathInput
filePaths(x) <- value
sampleInformation(x)
# S4 method for FilePathInput
sampleInformation(x)
sampleInformation(x) <- value
# S4 method for FilePathInput
sampleInformation(x) <- valueExamples
file_paths <- metaboData::filePaths('FIE-HRMS','BdistachyonEcotypes')
sample_information <- metaboData::runinfo('FIE-HRMS','BdistachyonEcotypes')
workflow_input <- inputFilePath(file_paths,sample_information)
## Return the input file paths
if (FALSE) {
filePaths(workflow_input)
}
## Set the input file paths
filePaths(workflow_input) <- c('a_file.mzML')
## Return the sample information
sampleInformation(workflow_input)
#> # A tibble: 68 × 7
#> fileOrder injOrder fileName batch block name class
#> <dbl> <dbl> <chr> <dbl> <dbl> <chr> <chr>
#> 1 1 64 1.mzML.gz 1 5 ABR1_1 ABR1
#> 2 2 40 10.mzML.gz 1 3 ABR1_10 ABR1
#> 3 3 52 11.mzML.gz 1 4 ABR1_11 ABR1
#> 4 4 67 12.mzML.gz 1 5 ABR1_12 ABR1
#> 5 5 32 13.mzML.gz 1 3 ABR1_13 ABR1
#> 6 6 53 14.mzML.gz 1 4 ABR1_14 ABR1
#> 7 7 4 15.mzML.gz 1 1 ABR1_15 ABR1
#> 8 8 34 16.mzML.gz 1 3 ABR5_1 ABR5
#> 9 9 38 17.mzML.gz 1 3 ABR5_2 ABR5
#> 10 10 59 18.mzML.gz 1 5 ABR5_3 ABR5
#> # ℹ 58 more rows
## Set the sample information
sampleInformation(workflow_input) <- tibble::tibble(fileName = 'a_file.mzML')